Staff – Bioinformatics Centre - University of Copenhagen

Anders Krogh

Anders Krogh

Professor


  1. 2018
  2. Published

    Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History. / Liu, Siyang; Huang, Shujia; Chen, Fang; Zhao, Lijian; Yuan, Yuying; Francis, Stephen Starko; Fang, Lin; Li, Zilong; Lin, Long; Liu, Rong; Zhang, Yong; Xu, Huixin; Li, Shengkang; Zhou, Yuwen; Davies, Robert W.; Liu, Qiang; Walters, Robin G.; Lin, Kuang; Ju, Jia; Komeliussen, Thorfinn; Yang, Melinda A.; Fu, Qiaomei; Wang, Jun; Zhou, Lijun; Krogh, Anders; Zhang, Hongyun; Wang, Wei; Chen, Zhengming; Cai, Zhiming; Yin, Ye; Yang, Huanming; Mao, Mao; Shendure, Jay; Wang, Jian; Albrechtsen, Anders; Jin, Xin; Nielsen, Rasmus; Xu, Xun.

    In: Cell, Vol. 175, No. 2, 2018, p. 347-359, e1-e7.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. / Matey-Hernandez, Maria Luisa; Danish Pan Genome Consortium ; Brunak, Søren; Izarzugaza, Jose M.G.; Sørensen, Lasse Maretty; Sibbesen, Jonas Andreas; Liu, Siyang; Belling, Kirstine G; Have, Christian Theil; Bork-Jensen, Jette; Sun, Jihua; Hansen, Torben; Krogh, Anders; Sørensen, Thorkild I.A.; Pedersen, Oluf Borbye; Wang, Jun; Eiberg, Hans Rudolf Lytchoff; Kristiansen, Karsten.

    In: BMC Bioinformatics, Vol. 19, 239, 2018, p. 1-12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Accurate genotyping across variant classes and lengths using variant graphs. / Sibbesen, Jonas Andreas; Maretty, Lasse; Krogh, Anders.

    In: Nature Genetics, Vol. 50, 2018, p. 1054-1059.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. 2017
  6. Published

    Sugar metabolism of the first thermophilic Planctomycete Thermogutta terrifontis : comparative genomic and transcriptomic approaches. / Elcheninov, Alexander G.; Menzel, Peter; Gudbergsdottir, Soley R.; Slesarev, Alexei I.; Kadnikov, Vitaly V.; Krogh, Anders; Bonch-Osmolovskaya, Elizaveta A.; Peng, Xu; Kublanov, Ilya V.

    In: Frontiers in Microbiology, Vol. 8, 2140, 02.11.2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Assembly and analysis of 100 full MHC haplotypes from the Danish population. / Jensen, Jacob M.; Villesen, Palle; Friborg, Rune M.; Mailund, Thomas; Besenbacher, Søren; Sørensen, Lasse Maretty; Petersen, Bent; Sibbesen, Jonas Andreas; Liu, Siyang; Skov, Laurits; Belling, Kirstine; Have, Christian Theil; Izarzugaza, Jose M. G.; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian; Rao, Junhua; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; Beusekom, Johan V.; Espeseth, Thomas; Flindt, Esben; Halager, Anders E.; Hellard, Stephanie Le; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Matey-Hernandez, Maria Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick; Syed, Ali; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Bolund, Lars; Krogh, Anders; Sørensen, Thorkild I. A.; Pedersen, Oluf Borbye; Gupta, Ramneek; Rasmussen, Simon; Børglum, Anders D.; Wang, Jun; Eiberg, Hans Rudolf Lytchoff; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: Genome Research, Vol. 27, No. 9, 09.2017, p. 1597-1607.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors. / Plass, Mireya; Rasmussen, Simon Horskjær; Krogh, Anders.

    In: PloS Computational Biology, Vol. 13, No. 4, e1005460, 14.04.2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. / Sørensen, Lasse Maretty; Jensen, Jacob Malte; Petersen, Bent; Sibbesen, Jonas Andreas; Liu, Siyang; Villesen, Palle; Skov, Laurits; Belling, Kirstine; Have, Christian Theil; Izarzugaza, Jose M. G.; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian; Rao, Junhua; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; van Beusekom, Johan; Espeseth, Thomas; Flindt, Esben; Friborg, Rune M.; Halager, Anders E.; Le Hellard, Stephanie; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, Maria Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick; Syed, Ali; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I. A.; Pedersen, Oluf Borbye; Gupta, Ramneek; Rasmussen, Simon; Besenbacher, Søren; Børglum, Anders D.; Wang, Jun; Eiberg, Hans Rudolf Lytchoff; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: Nature, Vol. 548, No. 7665, 03.08.2017, p. 87-91.

    Research output: Contribution to journalLetterResearchpeer-review

  10. 2016
  11. Published

    Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs. / Islin, Sóley Ruth; Menzel, Peter; Krogh, Anders; Young, Mark; Peng, Xu.

    In: Environmental Microbiology, Vol. 18, No. 3, 2016, p. 863-874.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Fast and sensitive taxonomic classification for metagenomics with Kaiju. / Menzel, Peter; Ng, Kim Lee; Krogh, Anders.

    In: Nature Communications, Vol. 7, 11257, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    RNA sequencing of trigeminal ganglia in Rattus Norvegicus after glyceryl trinitrate infusion with relevance to migraine. / Pedersen, Sara Hougaard; Sørensen, Lasse Maretty; Ramachandran, Roshni; Sibbesen, Jonas Andreas; Yakimov, Victor; Christensen, Rikke Elgaard; Hansen, Thomas Folkmann; Krogh, Anders; Olesen, Jes; Olesen, Inger Jansen.

    In: P L o S One, Vol. 11, No. 5, e0155039, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

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