Bioinformatics Centre > Staff > Description

Anders Krogh

Professor

Functional genomics
Ole Maaløes Vej 5, 2200 Kbh. N

Location: Biocenter, 1-2-20
Phone: +45 353-21329
Phone (Reception desk): +45 353-21311
E-mail: krogh@binf.ku.dk

Selected publications

• EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance.

  Larsen, T.S. ; Krogh, Anders Stærmose. In: BMC Bioinformatics. 2003 ; No. 4(1), p. 21
  Research: Peer-reviewed article

• Prediction of lipoprotein signal peptides in Gram-negative bacteria..

  Juncker, A.S. ; Willenbrock, H. ; Heijne, G. von ; Nielsen, H. ; Krogh, Anders Stærmose. In: Protein Sci.. 2003 ; No. 12(8), p. 1652-1662
  Research: Peer-reviewed article

• Reliability measures for membrane protein topology prediction algorithms.

  Melén, K. ; Krogh, Anders Stærmose ; Heijne, G. von. In: Journal of Molecular Biology. 2003 ; No. 327(3), p. 735-744
  Research: Peer-reviewed article

• RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box.

  Petersen, Lise ; Larsen, T.S. ; Ussery, D.W. ; On, S.L.W. ; Krogh, Anders Stærmose. In: Journal of Molecular Biology. 2003 ; No. 326(5), p. 1361-1372
  Research: Peer-reviewed article

• A Combined Transmembrane Topology and Signal Peptide Prediction Method.

  Kall, L. ; Krogh, Anders Stærmose ; Sonnhammer, E. L.. In: Journal of Molecular Biology. 2004 ; No. Vol. 338 (5), London, Academic Press. p. 1027-36
  Research: Article, not peer-reviewed

• Teaching computers to fold proteins.

  Winther, O. ; Krogh, Anders Stærmose. In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 2004 ; No. Vol. 70 (3) pt. 1, New York, NY : American Physical Society. p. 030903
  Research: Article, not peer-reviewed

• Training HMM structure with genetic algorithm for biological sequence analysis.

  Won, K. J. ; Krogh, Anders Stærmose. In: Bioinformatics. 2004 ; No. Vol. 20 (18), p. 3613-9
  Research: Article, not peer-reviewed

• An HMM posterior decoder for sequence feature prediction that includes homology information.

  Käll, Lukas ; Krogh, Anders Stærmose ; Sonnhammer, Erik L. L.. In: Bioinformatics. 2005 ; Vol. 21, No. 1, June 2005. Oxford UP.: p. i251 - i257
  Research: Peer-reviewed article

• Computational evidence for hundreds of non-conserved plant microRNAs.

  Lindow, Morten ; Krogh, Anders Stærmose. In: BMC Genomics. 2005 ; Vol. 6, 13 September 2005. London, Biology Reports Ltd. p. 119
  Research: Peer-reviewed article

• Large-scale prokaryotic gene prediction and comparison to genome annotation.

  Nielsen, Pernille ; Krogh, Anders Stærmose. In: Bioinformatics. 2005 ; Vol. 21, No. 24, December 15, 2005. Oxford, Oxford U.P.. p. 4322-9
  Research: Peer-reviewed article

• A hidden Markov model approach for determining expression from genomic tiling micro arrays.

  Terkelsen, Kasper Munch ; Gardner, P. P. ; Arctander, Peter ; Krogh, A.. In: BMC Bioinformatics. 2006 ; Vol. 7, No. 239, 3 May 2006. London.
  Research: Peer-reviewed article

• Automatic generation of gene finders for eukaryotic species.

  Terkelsen, Kasper Munch ; Krogh, A.. In: BMC Bioinformatics. 2006 ; Vol. 7, No. 263, 21 May 2006. London.
  Research: Peer-reviewed article

• Evolving the structure of hidden Markov Models.

  won, K. J. ; Prugel-Bennett, A. ; Krogh, A.. In: IEEE Transactions on Evolutionary Computation. 2006 ; Vol. 10, No. 1, Feb. 2006. London. p. 39-49
  Research: Peer-reviewed article

• Measuring covariation in RNA alignments: Physical realism improves information measures.

  Lindgreen, Stinus ; Gardner, Paul Phillip ; Krogh, Anders. In: Bioinformatics. 2006 ; Vol. 22, No. 24, October 12. p. 2988-2995
  Research: Peer-reviewed article

• Novel overlapping coding sequences in Chlamydia trachomatis.

  Jensen, Klaus Thorleif ; Petersen, Lise ; Falk, Søren ; Iversen, Pernille ; Andersen, Peter ; Theisen, Michael ; Krogh, A.. In: FEMS Microbiology Reviews. 2006 ; Vol. 265, No. 1, December 2006. New York. p. 106-17
  Research: Peer-reviewed article

• PONGO: a web server for multiple predictions of all-alpha transmembrane proteins.

  Amico, M. ; Finelli, M. ; Rossi, I. ; Zauli, A. ; Elofsson, A. ; Viklund, H. ; Heijne, G. von ; Joes, D. ; Krogh, A. ; Fariselli, P. ; Luigi, Martelli P. ; Casadio, R.. In: Nucleic Acids Research. 2006 ; Vol. 34, Oxford, OUP. p. W169-72
  Research: Peer-reviewed article

• Sampling Realistic Protein Conformations Using Local Structural Bias.

  Hamelryck, Thomas Wim ; Kent, John T. ; Krogh, A.. In: PLoS ONE. 2006 ; Vol. 2, No. 9, September 2006. San Francisco, C.A.. p. e131
  Research: Peer-reviewed article

• A code for transcription initiation in mammalian genomes.

  Frith, Martin C. ; Valen, Eivind Dale ; Krogh, Anders ; Hayashizaki, Yoshihide ; Carninci, Piero ; Sandelin, Albin Gustav. In: Genome Research. 2007 ; Vol. 18, No. 1, Cold Spring Harbor, NY: p. 1-12
  Research: Peer-reviewed article

• Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server..

  Käll, Lukas ; Krogh, Anders ; Sonnhammer, Erik L L. In: Nucleic Acids Research. 2007 ; Vol. 35, No. Web Server issue, 2007-Jul. England. p. W429-32
  Research: Peer-reviewed article

• An evolutionary method for learning HMM structure: prediction of protein secondary structure..

  Won, Kyoung-Jae ; Hamelryck, Thomas ; Prügel-Bennett, Adam ; Krogh, Anders. In: BMC bioinformatics. 2007 ; Vol. 8, 2007-null. London; England: p. 357
  Research: Peer-reviewed article