Staff – Bioinformatics Centre - University of Copenhagen

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Anders Krogh

Anders Krogh

Professor


  1. 2017
  2. Published

    Assembly and analysis of 100 full MHC haplotypes from the Danish population. / Jensen, Jacob M.; Villesen, Palle; Friborg, Rune M.; Mailund, Thomas; Besenbacher, Søren; Sørensen, Lasse Maretty; Petersen, Bent; Sibbesen, Jonas Andreas; Liu, Siyang; Skov, Laurits; Belling, Kirstine; Have, Christian Theil; Izarzugaza, Jose M. G.; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian; Rao, Junhua; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; Beusekom, Johan V.; Espeseth, Thomas; Flindt, Esben; Halager, Anders E.; Hellard, Stephanie Le; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Matey-Hernandez, Maria Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick; Syed, Ali; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Bolund, Lars; Krogh, Anders; Sørensen, Thorkild I. A.; Pedersen, Oluf Borbye; Gupta, Ramneek; Rasmussen, Simon; Børglum, Anders D.; Wang, Jun; Eiberg, Hans Rudolf Lytchoff; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: Genome Research, Vol. 27, No. 9, 09.2017, p. 1597-1607.

    Research output: Research - peer-reviewJournal article

  3. Published

    Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors. / Plass, Mireya; Rasmussen, Simon Horskjær; Krogh, Anders.

    In: PloS Computational Biology, Vol. 13, No. 4, e1005460, 14.04.2017.

    Research output: Research - peer-reviewJournal article

  4. Published

    Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. / Sørensen, Lasse Maretty; Jensen, Jacob Malte; Petersen, Bent; Sibbesen, Jonas Andreas; Liu, Siyang; Villesen, Palle; Skov, Laurits; Belling, Kirstine; Have, Christian Theil; Izarzugaza, Jose M. G.; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian; Rao, Junhua; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; van Beusekom, Johan; Espeseth, Thomas; Flindt, Esben; Friborg, Rune M.; Halager, Anders E.; Le Hellard, Stephanie; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, Maria Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick; Syed, Ali; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I. A.; Pedersen, Oluf Borbye; Gupta, Ramneek; Rasmussen, Simon; Besenbacher, Søren; Børglum, Anders D.; Wang, Jun; Eiberg, Hans Rudolf Lytchoff; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: Nature, Vol. 548, No. 7665, 03.08.2017, p. 87-91.

    Research output: Research - peer-reviewLetter

  5. 2016
  6. Published

    Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs. / Islin, Sóley Ruth; Menzel, Peter; Krogh, Anders; Young, Mark; Peng, Xu.

    In: Environmental Microbiology, Vol. 18, No. 3, 2016, p. 863-874.

    Research output: Research - peer-reviewJournal article

  7. Published

    Fast and sensitive taxonomic classification for metagenomics with Kaiju. / Menzel, Peter; Ng, Kim Lee; Krogh, Anders.

    In: Nature Communications, Vol. 7, 11257, 2016.

    Research output: Research - peer-reviewJournal article

  8. Published

    RNA sequencing of trigeminal ganglia in Rattus Norvegicus after glyceryl trinitrate infusion with relevance to migraine. / Pedersen, Sara Hougaard; Sørensen, Lasse Maretty; Ramachandran, Roshni; Sibbesen, Jonas Andreas; Yakimov, Victor; Christensen, Rikke Elgaard; Hansen, Thomas Folkmann; Krogh, Anders; Olesen, Jes; Olesen, Inger Jansen.

    In: P L o S One, Vol. 11, No. 5, e0155039, 2016.

    Research output: Research - peer-reviewJournal article

  9. 2015
  10. Published

    Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. / Besenbacher, Søren; Liu, Siyang; Gonzalez-Izarzugaza, Jose Maria; Grove, Jakob; Belling, Kirstine; Bork-Jensen, Jette; Huang, Shujia; Als, Thomas Damm; Li, Shengting; Yadav, Rachita; Rubio García, Arcadio; Lescai, Francesco; Demontis, Ditte; Rao, Junhua; Ye, Weijian; Mailund, Thomas; Møllegaard Friborg, Rune; Pedersen, Christian N. S.; Xu, Ruiqi; Sun, Jihua; Liu, Hao; Wang, Ou; Cheng, Xiaofang; Flores, David; Rydza, Emil Karol; Rapacki, Kristoffer; Sørensen, John Damm; Chmura, Piotr Jaroslaw; Westergaard, David; Dworzynski, Piotr; Sørensen, Thorkild I. A.; Lund, Ole; Hansen, Torben; Xu, Xun; Li, Ning; Bolund, Lars; Pedersen, Oluf; Eiberg, Hans; Krogh, Anders; Børglum, Anders D.; Brunak, Søren; Kristiansen, Karsten; Schierup, Mikkel H; Wang, Jun; Gupta, Ramneek; Villesen, Palle; Rasmussen, Simon.

    In: Nature Communications, Vol. 6, 5969, 2015.

    Research output: Research - peer-reviewJournal article

  11. Published

    De novo assembly of a haplotype-resolved human genome. / Cao, Hongzhi; Wu, Honglong; Luo, Ruibang; Huang, Shujia; Sun, Yuhui; Tong, Xin; Xie, Yinlong; Liu, Binghang; Yang, Hailong; Zheng, Hancheng; Li, Jian; Li, Bo; Wang, Yu; Yang, Fang; Sun, Peng; Liu, Siyang; Gao, Peng; Huang, Haodong; Sun, Jing; Chen, Dan; He, Guangzhu; Huang, Weihua; Huang, Zheng; Li, Yue; Tellier, Laurent C.A.M.; Liu, Xiao; Feng, Qiang; Xu, Xun; Zhang, Xiuqing; Bolund, Lars; Krogh, Anders; Kristiansen, Karsten; Drmanac, Radoje; Drmanac, Snezana; Nielsen, Rasmus; Li, Songgang; Wang, Jian; Yang, Huanming; Li, Yingrui; Wong, Gane Ka-Shu; Wang, Jun.

    In: Nature Biotechnology, Vol. 33, No. 6, 2015, p. 617-626.

    Research output: Research - peer-reviewJournal article

  12. Published

    Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation. / Hansen, Heidi Theil; Rasmussen, Simon Horskjær; Adolph, Sidsel Kramshøj; Plass, Mireya; Krogh, Anders; Sanford, Jeremy; Nielsen, Finn Cilius; Christiansen, Jan.

    In: Genome Biology (Online Edition), Vol. 16, 123, 2015.

    Research output: Research - peer-reviewJournal article

  13. Published

    Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale. / Liu, Siyang; Huang, Shujia; Rao, Junhua; Ye, Weijian; Krogh, Anders; Wang, Jun.

    In: GigaScience, Vol. 4, 64, 2015.

    Research output: Research - peer-reviewJournal article

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